VIPR HMM: a hidden Markov model for detecting recombination with microbial detection microarrays
نویسندگان
چکیده
منابع مشابه
VIPR HMM: a hidden Markov model for detecting recombination with microbial detection microarrays
MOTIVATION Current methods in diagnostic microbiology typically focus on the detection of a single genomic locus or protein in a candidate agent. The presence of the entire microbe is then inferred from this isolated result. Problematically, the presence of recombination in microbial genomes would go undetected unless other genomic loci or protein components were specifically assayed. Microarra...
متن کاملIntrusion Detection Using Evolutionary Hidden Markov Model
Intrusion detection systems are responsible for diagnosing and detecting any unauthorized use of the system, exploitation or destruction, which is able to prevent cyber-attacks using the network package analysis. one of the major challenges in the use of these tools is lack of educational patterns of attacks on the part of the engine analysis; engine failure that caused the complete training, ...
متن کاملAbnormality Detection in a Landing Operation Using Hidden Markov Model
The air transport industry is seeking to manage risks in air travels. Its main objective is to detect abnormal behaviors in various flight conditions. The current methods have some limitations and are based on studying the risks and measuring the effective parameters. These parameters do not remove the dependency of a flight process on the time and human decisions. In this paper, we used an HMM...
متن کاملDetecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets from certain bacteria and viruses due to recombination, a process that leads to the creation of mosaic sequences from different strains and, if undetected, causes systematic errors in phylogenetic tree estimation. In the...
متن کاملabnormality detection in a landing operation using hidden markov model
the air transport industry is seeking to manage risks in air travels. its main objective is to detect abnormal behaviors in various flight conditions. the current methods have some limitations and are based on studying the risks and measuring the effective parameters. these parameters do not remove the dependency of a flight process on the time and human decisions. in this paper, we used an hmm...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2012
ISSN: 1460-2059,1367-4803
DOI: 10.1093/bioinformatics/bts560